Life is a complex system. Motions of individual atoms and molecules in a living system obey physics laws and principles. However, how to connect the motion of atoms and molecules to life is probably the most challenging problem in life science. Biophysics is expected to play a unique role in solving this mystery and computation is an important tool in studying life science.
We are interested in understanding physical properties and behaviors of important biological molecular systems such as nucleic acid (DNA) and key biophysical processes. Some questions we are addressing include what are the origins of the unique physical properties of biomolecules, how we can manipulate a DNA molecule, how a DNA molecule behaves in a dense and congested state, how energy is transported along a DNA helix, and how a drug molecule interact with DNA. To answer these questions, we use computational techniques at different length and time scales in our study, on top of a synergetic experimental and theoretical approach. For example, ab initio methods are used to investigate the fundamental properties of biomolecules; molecular dynamics, Monte Carlo simulation, and mesoscopic simulation are used to study various biophysical processes; modeling and analytical approach are used to study the macroscopic behaviors. In the multiscale approach, information obtained at a lower level investigation can be used as input for a higher level simulation and prediction from a higher level simulation guides the lower level study.